GrainGenes Marker Report: POPA1_0399
Locus
POPA1_0399
Type
SNP
Synonym
Other name 11_10399 BOPA1_11_10399 BOPA1_2964-382 Synonym 11_10399
Chromosome
2H
Chromosome Arm
2HS
Map
Barley, 2012 9KSNP 2H 39.7 Hordeum-OPA-2009-2H 39.1 Hordeum-OPA123-2008-2H 39.1 Hordeum-OPAConsensus-2011-2H 40.03
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_15856 i_11_10399
Reference
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0399 Marker name in barley OPA1 = 11_10399 Original SNP name = 2964-382 Most representative HarvEST:Barley Assembly #32 Unigene = 2964 Most representative HarvEST:Barley Assembly #35 Unigene = 15856 HarvEST Unigene 35 Probe Set = Contig4229_at Unigene 35 Rice Locus = LOC_Os02g35130 Description for best rice BLAST hit to Unigene 35 member = protein AIG1, putative, expressed; E value = 1E-153 Original SNP name = U32_2213_658 Description for best rice BLAST hit to Unigene 35 member = protein protein AIG1, putative, expressed; E value = 1E-153 BLAST hit in the rice genome = protein AIG1, putative, expressed
Probe for Locus
HAR35_15856
Locus
POPA1_0399
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA1_0399
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