GrainGenes Marker Report: POPA1_0402
Locus
POPA1_0402
Type
SNP
Map Data
Barley, OPA 2009, Consensus
Probe
HAR35_435
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark
[ Hide all but 1 of 7 ] Marker name in barley Pilot OPA1 = 1_0402 Most representative HarvEST:Barley Assembly #32 Unigene = 299 Most representative HarvEST:Barley Assembly #35 Unigene = 435 HarvEST Unigene 35 Probe Set = Contig446_at; HV_CEa0010K11f_x_at; baak1k18_s_at Unigene 35 Rice Locus = LOC_Os03g03720 Description for best rice BLAST hit to Unigene 35 member = glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor, putative, expressed; E value = 0 BLAST hit in the rice genome = glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor, putative, expressed
Probe for Locus
HAR35_435
Locus
POPA2_0454 POPA1_0402
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA1_0402
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