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GrainGenes Marker Report: POPA1_0403

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Locus	POPA1_0403
Type	SNP
Synonym	Synonym 12_10403
Chromosome	7H
Chromosome Arm	7HS
Map	Hordeum-OPA-2009-7H 61.32 Hordeum-OPA123-2008-7H 61.32 Hordeum-OPAConsensus-2011-7H 55.64 Hordeum-OWB-OPA2008-7H 60.879
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Probe	HAR35_15942
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0403 Marker name in barley OPA1 = 12_10403 Original SNP name = 2996-2061 Most representative HarvEST:Barley Assembly #32 Unigene = 2996 Most representative HarvEST:Barley Assembly #35 Unigene = 15942 HarvEST Unigene 35 Probe Set = rbags16c12_s_at Unigene 35 Rice Locus = LOC_Os06g09570 Description for best rice BLAST hit to Unigene 35 member = nucleolar GTP-binding protein 1, putative, expressed; E value = 0 Marker name in barley OPA2 = 12_10403 Description for best rice BLAST hit to Unigene 35 member = protein nucleolar GTP-binding protein 1, putative, expressed; E value = 0 BLAST hit in the rice genome = nucleolar GTP-binding protein 1, putative, expressed
Probe for Locus	HAR35_15942
Locus	POPA1_0403 POPA2_0456
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare