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GrainGenes Marker Report: POPA1_0404

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Locus
POPA1_0404
Type
SNP
Synonym
Other name11_10404
BOPA1_11_10404
BOPA1_3000-1074
Synonym11_10404
Chromosome
2H
Chromosome Arm
2HL
Map
Barley, 2012 9KSNP 2H109.8
Hordeum-OPA-2009-2H117.2
Hordeum-OPA123-2008-2H117.2
Hordeum-OPAConsensus-2011-2H133.71
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_1395
i_11_10404
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 1_0404
Marker name in barley OPA1 = 11_10404
Original SNP name = 3000-1074
Most representative HarvEST:Barley Assembly #32 Unigene = 3000
Most representative HarvEST:Barley Assembly #35 Unigene = 1395
HarvEST Unigene 35 Probe Set = Contig4250_at; Contig4250_s_at
Unigene 35 Rice Locus = LOC_Os04g50120
Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 1E-121
HarvEST Unigene 35 Probe Set = Contig4250_at, Contig4250_s_at
Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 1E-121
BLAST hit in the rice genome = expressed protein


Probe for Locus
HAR35_1395
Locus
POPA1_0404
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare