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GrainGenes Marker Report: POPA1_0405

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Locus	POPA1_0405
Type	SNP
Synonym	Other name 11_10405 BOPA1_11_10405 BOPA1_3007-1337 Synonym 11_10405
Chromosome	5H
Chromosome Arm	5HL
Map	Hordeum-OPAConsensus-2011-5H 172.83
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus
Species	Hordeum vulgare
Probe	HAR35_1114 i_11_10405
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_0405 Marker name in barley OPA1 = 11_10405 Original SNP name = 3007-1337 Most representative HarvEST:Barley Assembly #32 Unigene = 3007 Most representative HarvEST:Barley Assembly #35 Unigene = 1114 HarvEST Unigene 35 Probe Set = Contig4240_s_at; Contig4242_at Unigene 35 Rice Locus = LOC_Os03g62620 Description for best rice BLAST hit to Unigene 35 member = salt tolerance protein, putative, expressed; E value = 1E-149 BLAST hit in the rice genome = salt tolerance protein, putative, expressed
Probe for Locus	HAR35_1114
Locus	POPA1_0405 POPA2_0459