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GrainGenes Marker Report: POPA1_0406

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Locus
POPA1_0406
Type
SNP
Synonym
Other name12_10406
BOPA2_12_10406
Synonym12_10406
Chromosome
7H
Chromosome Arm
7HS
Map
Hordeum-OPA-2009-7H6.78
Hordeum-OPA123-2008-7H6.78
Hordeum-OPAConsensus-2011-7H7.33
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_1490
i_12_10406
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 1_0406
Marker name in barley OPA1 = 12_10406
Original SNP name = 3011-438
Most representative HarvEST:Barley Assembly #32 Unigene = 3011
Most representative HarvEST:Barley Assembly #35 Unigene = 1490
HarvEST Unigene 35 Probe Set = Contig4280_at; Contig4280_s_at
Unigene 35 Rice Locus = LOC_Os07g06550
Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 0
Marker name in barley OPA2 = 12_10406
HarvEST Unigene 35 Probe Set = Contig4280_at, Contig4280_s_at
Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 0
BLAST hit in the rice genome = expressed protein


Probe for Locus
HAR35_1490
Locus
POPA1_0406
Synonym
SynonymCDO1400
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare