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GrainGenes Marker Report: POPA1_0414

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Locus
POPA1_0414
Type
SNP
Synonym
Other name11_10414
BOPA1_11_10414
BOPA1_3056-1317
Synonym11_10414
Chromosome
5H
Chromosome Arm
5HL
Map
Hordeum-OPA-2009-5H103.92
Hordeum-OPA123-2008-5H103.92
Hordeum-OPAConsensus-2011-5H93.22
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_15957
i_11_10414
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 1_0414
Marker name in barley OPA1 = 11_10414
Original SNP name = 3056-1317
Most representative HarvEST:Barley Assembly #32 Unigene = 3056
Most representative HarvEST:Barley Assembly #35 Unigene = 15957
HarvEST Unigene 35 Probe Set = Contig4383_s_at; Contig4384_at
Unigene 35 Rice Locus = LOC_Os09g04670
Description for best rice BLAST hit to Unigene 35 member = DAG protein, chloroplast precursor, putative, expressed; E value = 3E-71
HarvEST Unigene 35 Probe Set = Contig4383_s_at, Contig4384_at
Description for best rice BLAST hit to Unigene 35 member = protein DAG protein, chloroplast precursor, putative, expressed; E value = 3E-71
BLAST hit in the rice genome = DAG protein, chloroplast precursor, putative, expressed


Probe for Locus
HAR35_15957
Locus
POPA1_0414
Synonym
SynonymWG364
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare