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GrainGenes Marker Report: POPA1_0418

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Locus	POPA1_0418
Type	SNP
Chromosome	7H
Chromosome Arm	7HS
Map	Barley-Core-2014_7H 64.56 Hordeum-OPA-2009-7H 61.95 Hordeum-OPA123-2008-7H 61.95 Hordeum-OPAConsensus-2011-7H 56.25
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, USDA Core, 2014 Consensus
Probe	HAR35_15781
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_0418 Most representative HarvEST:Barley Assembly #32 Unigene = 3095 Most representative HarvEST:Barley Assembly #35 Unigene = 15781 HarvEST Unigene 35 Probe Set = Contig4454_at; HS07G21u_s_at Unigene 35 Rice Locus = LOC_Os02g22780 Description for best rice BLAST hit to Unigene 35 member = T-complex protein 1 subunit delta, putative, expressed; E value = 0 Original SNP name = 3095-1153 HarvEST Unigene 35 Probe Set = Contig4454_at, HS07G21u_s_at Description for best rice BLAST hit to Unigene 35 member = protein T-complex protein 1 subunit delta, putative, expressed; E value = 0 BLAST hit in the rice genome = T-complex protein 1 subunit delta, putative, expressed
Probe for Locus	HAR35_15781
Locus	POPA1_0418 POPA2_0477
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare