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GrainGenes Marker Report: POPA1_0423

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Locus	POPA1_0423
Type	SNP
Synonym	Other name 11_10423 BOPA1_11_10423 BOPA1_3128-1476 Synonym 11_10423
Chromosome	3H
Chromosome Arm	3HL
Map	Hordeum-OPAConsensus-2011-3H 177.33
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus
Species	Hordeum vulgare
Probe	HAR35_1377 i_11_10423
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_0423 Marker name in barley OPA1 = 11_10423 Original SNP name = 3128-1476 Most representative HarvEST:Barley Assembly #32 Unigene = 3128 Most representative HarvEST:Barley Assembly #35 Unigene = 1377 HarvEST Unigene 35 Probe Set = Contig4481_s_at Unigene 35 Rice Locus = LOC_Os01g73790 Description for best rice BLAST hit to Unigene 35 member = bifunctional polymyxin resistance arnA protein, putative, expressed; E value = 0 BLAST hit in the rice genome = bifunctional polymyxin resistance arnA protein, putative, expressed
Probe for Locus	HAR35_1377
Locus	POPA1_0423