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GrainGenes Marker Report: POPA1_0434

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Locus	POPA1_0434
Type	SNP
Synonym	Synonym 11_10434
Chromosome	1H
Chromosome Arm	1HL
Map	Hordeum-OPA-2009-1H 86.19 Hordeum-OPA123-2008-1H 86.19 Hordeum-OPAConsensus-2011-1H 88.88
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_1707
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 1_0434 Marker name in barley OPA1 = 11_10434 Original SNP name = 3204-811 Most representative HarvEST:Barley Assembly #32 Unigene = 3204 Most representative HarvEST:Barley Assembly #35 Unigene = 1707 HarvEST Unigene 35 Probe Set = Contig4564_at; Contig4565_s_at Unigene 35 Rice Locus = LOC_Os05g39110 Description for best rice BLAST hit to Unigene 35 member = selT-like protein precursor, putative, expressed; E value = 1E-120 Original SNP name = ABC12677_2_128 HarvEST Unigene 35 Probe Set = Contig4564_at, Contig4565_s_at Description for best rice BLAST hit to Unigene 35 member = protein selT-like protein precursor, putative, expressed; E value = 1E-120 BLAST hit in the rice genome = selT-like protein precursor, putative, expressed
Probe for Locus	HAR35_1707
Locus	POPA1_0434
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare