Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA1_0437

[Submit comment/correction]

Locus	POPA1_0437
Type	SNP
Synonym	Other name 11_10437 BOPA1_11_10437 BOPA1_3215-654 Synonym 11_10437
Chromosome	3H
Chromosome Arm	3HL
Map	Barley, 2012 9KSNP 3H 51.6 Hordeum-OPA-2009-3H 56.4 Hordeum-OPA123-2008-3H 56.4 Hordeum-OPAConsensus-2011-3H 65.25
	[ Show Nearby Loci ]
Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_15967 i_11_10437
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0437 Marker name in barley OPA1 = 11_10437 Original SNP name = 3215-654 Most representative HarvEST:Barley Assembly #32 Unigene = 3215 Most representative HarvEST:Barley Assembly #35 Unigene = 15967 HarvEST Unigene 35 Probe Set = Contig4587_at; HW07M17u_s_at Unigene 35 Rice Locus = LOC_Os01g40570 Description for best rice BLAST hit to Unigene 35 member = outer plastidial membrane protein porin, putative, expressed; E value = 1E-141 HarvEST Unigene 35 Probe Set = Contig4587_at, HW07M17u_s_at Description for best rice BLAST hit to Unigene 35 member = protein outer plastidial membrane protein porin, putative, expressed; E value = 1E-141 BLAST hit in the rice genome = outer plastidial membrane protein porin, putative, expressed
Probe for Locus	HAR35_15967
Locus	POPA1_0437
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare