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GrainGenes Marker Report: POPA1_0456

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Locus	POPA1_0456
Type	SNP
Synonym	Other name 11_10456 BOPA1_11_10456 BOPA1_3354-121 Synonym 11_10456
Chromosome	3H
Chromosome Arm	3HL
Map	Hordeum-OPA-2009-3H 56.4 Hordeum-OPA123-2008-3H 56.4 Hordeum-OPAConsensus-2011-3H 67.86
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_1781 i_11_10456
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0456 Marker name in barley OPA1 = 11_10456 Original SNP name = 3354-121 Most representative HarvEST:Barley Assembly #32 Unigene = 3354 Most representative HarvEST:Barley Assembly #35 Unigene = 1781 HarvEST Unigene 35 Probe Set = Contig4691_at; HM02O03r_s_at Unigene 35 Rice Locus = LOC_Os01g38510 Description for best rice BLAST hit to Unigene 35 member = protein transport protein Sec61 beta subunit, putative, expressed; E value = 2E-32 HarvEST Unigene 35 Probe Set = Contig4691_at, HM02O03r_s_at Description for best rice BLAST hit to Unigene 35 member = protein protein transport protein Sec61 beta subunit, putative, expressed; E value = 2E-32 BLAST hit in the rice genome = protein transport protein Sec61 beta subunit, putative, expressed
Probe for Locus	HAR35_1781
Locus	POPA1_0456
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare