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GrainGenes Marker Report: POPA1_0459

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Locus
POPA1_0459
Type
SNP
Synonym
Other name12_10459
BOPA2_12_10459
Synonym12_10459
Chromosome
7H
Chromosome Arm
7HS
Map
Barley, 2012 9KSNP 7H70.7
Hordeum-OPA-2009-7H77.85
Hordeum-OPA123-2008-7H77.85
Hordeum-OPAConsensus-2011-7H81.78
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_16227
i_12_10459
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 13 ]
Marker name in barley Pilot OPA1 = 1_0459
Marker name in barley OPA1 = 12_10459
Original SNP name = 3372-751
Most representative HarvEST:Barley Assembly #32 Unigene = 3372
Most representative HarvEST:Barley Assembly #35 Unigene = 16227
HarvEST Unigene 35 Probe Set = Contig4747_at; HVSMEn0011M11r2_s_at
Unigene 35 Rice Locus = LOC_Os08g45190
Description for best rice BLAST hit to Unigene 35 member = PGR5, putative, expressed; E value = 6E-51
Marker name in barley OPA2 = 12_10459
Original SNP name = U32_3369_2296
HarvEST Unigene 35 Probe Set = Contig4747_at, HVSMEn0011M11r2_s_at
Description for best rice BLAST hit to Unigene 35 member = protein PGR5, putative, expressed; E value = 6E-51
BLAST hit in the rice genome = PGR5, putative, expressed


Probe for Locus
HAR35_16227
Locus
POPA1_0459
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare