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GrainGenes Marker Report: POPA1_0460

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Locus	POPA1_0460
Type	SNP
Synonym	Synonym 11_10460
Chromosome	1H
Chromosome Arm	1HS
Map	Hordeum-OPA-2009-1H 0.95 Hordeum-OPA123-2008-1H 0.95 Hordeum-OPAConsensus-2011-1H 3.21 Hordeum-OWB-OPA2008-1H 6.775
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Probe	HAR35_197
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0460 Marker name in barley OPA1 = 11_10460 Original SNP name = 337-641 Most representative HarvEST:Barley Assembly #32 Unigene = 337 Most representative HarvEST:Barley Assembly #35 Unigene = 197 HarvEST Unigene 35 Probe Set = Contig295_at; Contig301_x_at; Contig523_x_at; Contig549_x_at; Contig765_x_at; Contig793_x_at; Contig811_x_at Unigene 35 Rice Locus = LOC_Os09g26999 Description for best rice BLAST hit to Unigene 35 member = keratin-associated protein 5-4, putative, expressed; E value = 6E-31 HarvEST Unigene 35 Probe Set = Contig295_at, Contig301_x_at, Contig523_x_at, Contig549_x_at, Contig765_x_at, Contig793_x_at, Contig811_x_at Description for best rice BLAST hit to Unigene 35 member = protein keratin-associated protein 5-4, putative, expressed; E value = 6E-31 BLAST hit in the rice genome = keratin-associated protein 5-4, putative, expressed
Probe for Locus	HAR35_197
Locus	POPA1_0460
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare