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GrainGenes Marker Report: POPA1_0462

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Locus	POPA1_0462
Type	SNP
Synonym	Other name 11_10462 BOPA1_11_10462 BOPA1_3379-1037 Synonym 11_10462
Chromosome	6H
Chromosome Arm	6HS
Map	Barley, 2012 9KSNP 6H 48.8 Hordeum-OPA-2009-6H 44.77 Hordeum-OPA123-2008-6H 44.77 Hordeum-OPAConsensus-2011-6H 49.17
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_966 i_11_10462
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0462 Marker name in barley OPA1 = 11_10462 Original SNP name = 3379-1037 Most representative HarvEST:Barley Assembly #32 Unigene = 3379 Most representative HarvEST:Barley Assembly #35 Unigene = 966 HarvEST Unigene 35 Probe Set = Contig4789_at; rbags16i17_s_at Unigene 35 Rice Locus = LOC_Os02g04100 Description for best rice BLAST hit to Unigene 35 member = proteasome subunit alpha type 1, putative, expressed; E value = 1E-135 HarvEST Unigene 35 Probe Set = Contig4789_at, rbags16i17_s_at Description for best rice BLAST hit to Unigene 35 member = protein proteasome subunit alpha type 1, putative, expressed; E value = 1E-135 BLAST hit in the rice genome = proteasome subunit alpha type 1, putative, expressed
Probe for Locus	HAR35_966
Locus	POPA1_0462
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare