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GrainGenes Marker Report: POPA1_0466

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Locus	POPA1_0466
Type	SNP
Synonym	Synonym 11_10466
Chromosome	1H
Chromosome Arm	1HL
Map	Hordeum-OPA-2009-1H 80.26 Hordeum-OPA123-2008-1H 80.26 Hordeum-OPAConsensus-2011-1H 84.71 Hordeum-OWB-OPA2008-1H 89.736
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Probe	HAR35_1715
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0466 Marker name in barley OPA1 = 11_10466 Original SNP name = 3406-221 Most representative HarvEST:Barley Assembly #32 Unigene = 3406 Most representative HarvEST:Barley Assembly #35 Unigene = 1715 HarvEST Unigene 35 Probe Set = Contig4773_at; Contig4774_s_at Unigene 35 Rice Locus = LOC_Os02g35090 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 2E-76 HarvEST Unigene 35 Probe Set = Contig4773_at, Contig4774_s_at Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 2E-76 BLAST hit in the rice genome = expressed protein
Probe for Locus	HAR35_1715
Locus	POPA1_0466
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare