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GrainGenes Marker Report: POPA1_0467

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Locus	POPA1_0467
Type	SNP
Synonym	Other name 11_10467 BOPA1_11_10467 BOPA1_3416-692 Synonym 11_10467
Chromosome	4H
Chromosome Arm	4HL
Map	Barley, 2012 9KSNP 4H 69 Hordeum-OPA-2009-4H 72.08 Hordeum-OPA123-2008-4H 72.08 Hordeum-OPAConsensus-2011-4H 82.81 Hordeum-OWB-OPA2008-4H 71.069
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_2004 i_11_10467
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_0467 Marker name in barley OPA1 = 11_10467 Original SNP name = 3416-692 Most representative HarvEST:Barley Assembly #32 Unigene = 3416 Most representative HarvEST:Barley Assembly #35 Unigene = 2004 HarvEST Unigene 35 Probe Set = Contig4844_s_at Unigene 35 Rice Locus = LOC_Os03g10110 Description for best rice BLAST hit to Unigene 35 member = preproMP73, putative, expressed; E value = 2E-37 Description for best rice BLAST hit to Unigene 35 member = protein preproMP73, putative, expressed; E value = 2E-37 BLAST hit in the rice genome = preproMP73, putative, expressed
Probe for Locus	HAR35_2004
Locus	POPA1_0467
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare