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GrainGenes Marker Report: POPA1_0477

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Locus	POPA1_0477
Type	SNP
Synonym	Other name 11_10477 BOPA1_11_10477 BOPA1_3478-1024 Synonym 11_10477
Chromosome	5H
Chromosome Arm	5HL
Map	Hordeum-OPA-2009-5H 113.11 Hordeum-OPA123-2008-5H 113.11 Hordeum-OPAConsensus-2011-5H 107.19 Hordeum-OWB-OPA2008-5H 131.491
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QTL with Locus Marker	MQTL_Du2024.yield-5H.7
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_14457 i_11_10477
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0477 Marker name in barley OPA1 = 11_10477 Original SNP name = 3478-1024 Most representative HarvEST:Barley Assembly #32 Unigene = 3478 Most representative HarvEST:Barley Assembly #35 Unigene = 14457 HarvEST Unigene 35 Probe Set = Contig4942_at Unigene 35 Rice Locus = LOC_Os02g32520 Description for best rice BLAST hit to Unigene 35 member = ERD1 protein, chloroplast precursor, putative, expressed; E value = 0 Original SNP name = U32_2783_2471 Description for best rice BLAST hit to Unigene 35 member = protein ERD1 protein, chloroplast precursor, putative, expressed; E value = 0 BLAST hit in the rice genome = ERD1 protein, chloroplast precursor, putative, expressed
Probe for Locus	HAR35_14457
Locus	POPA1_0477
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare