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GrainGenes Marker Report: POPA1_0500

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Locus	POPA1_0500
Type	SNP
Synonym	Other name 12_10500 BOPA2_12_10500 Synonym 12_10500
Chromosome	4H
Map	Hordeum-OPAConsensus-2011-4H 69.14
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus
Species	Hordeum vulgare
Probe	HAR35_16472 i_12_10500
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_0500 Marker name in barley OPA1 = 12_10500 Original SNP name = 3617-1123 Most representative HarvEST:Barley Assembly #32 Unigene = 3617 Most representative HarvEST:Barley Assembly #35 Unigene = 16472 HarvEST Unigene 35 Probe Set = Contig5123_at Unigene 35 Rice Locus = LOC_Os03g15360 Description for best rice BLAST hit to Unigene 35 member = leucoanthocyanidin reductase, putative; E value = 1E-163 BLAST hit in the rice genome = leucoanthocyanidin reductase, putative
Probe for Locus	HAR35_16472
Locus	POPA1_0500