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GrainGenes Marker Report: POPA1_0505

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Locus	POPA1_0505
Type	SNP
Synonym	Other name 12_10505 BOPA2_12_10505 Synonym 12_10505
Chromosome	3H
Chromosome Arm	3HL
Map	Hordeum-OPA-2009-3H 130.82 Hordeum-OPA123-2008-3H 130.82 Hordeum-OPAConsensus-2011-3H 137.74 Hordeum-OWB-OPA2008-3H 154.837
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_2093 i_12_10505
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 1_0505 Marker name in barley OPA1 = 12_10505 Original SNP name = 3635-400 Most representative HarvEST:Barley Assembly #32 Unigene = 3635 Most representative HarvEST:Barley Assembly #35 Unigene = 2093 HarvEST Unigene 35 Probe Set = Contig5075_at; Contig5075_s_at Unigene 35 Rice Locus = LOC_Os01g68300 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 3E-21 Marker name in barley OPA2 = 12_10505 Original SNP name = SCRI_bbc11945_01_349 HarvEST Unigene 35 Probe Set = Contig5075_at, Contig5075_s_at Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 3E-21 BLAST hit in the rice genome = expressed protein
Probe for Locus	HAR35_2093
Locus	POPA1_0505
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare