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GrainGenes Marker Report: POPA1_0520

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Locus	POPA1_0520
Type	SNP
Synonym	Other name 11_10520 BOPA1_11_10520 BOPA1_3689-1101 Synonym 11_10520
Chromosome	1H
Chromosome Arm	1HL
Map	Barley, 2012 9KSNP 1H 49.1 Hordeum-OPA-2009-1H 55.49 Hordeum-OPA123-2008-1H 55.49 Hordeum-OPAConsensus-2011-1H 45.2
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_16483 i_11_10520
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0520 Marker name in barley OPA1 = 11_10520 Original SNP name = 3689-1101 Most representative HarvEST:Barley Assembly #32 Unigene = 3689 Most representative HarvEST:Barley Assembly #35 Unigene = 16483 HarvEST Unigene 35 Probe Set = Contig5277_at; Contig5277_s_at Unigene 35 Rice Locus = LOC_Os10g42610 Description for best rice BLAST hit to Unigene 35 member = TPR domain protein, putative, expressed; E value = 3E-58 HarvEST Unigene 35 Probe Set = Contig5277_at, Contig5277_s_at Description for best rice BLAST hit to Unigene 35 member = protein TPR domain protein, putative, expressed; E value = 3E-58 BLAST hit in the rice genome = TPR domain protein, putative, expressed
Probe for Locus	HAR35_16483
Locus	POPA1_0520
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare