Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA1_0521

[Submit comment/correction]

Locus	POPA1_0521
Type	SNP
Synonym	Other name 11_10521 BOPA1_11_10521 BOPA1_3696-2238 Synonym 11_10521
Chromosome	5H
Map	Hordeum-OPAConsensus-2011-5H 129.61
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus
Species	Hordeum vulgare
Probe	HAR35_2111 i_11_10521
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_0521 Marker name in barley OPA1 = 11_10521 Original SNP name = 3696-2238 Most representative HarvEST:Barley Assembly #32 Unigene = 3696 Most representative HarvEST:Barley Assembly #35 Unigene = 2111 HarvEST Unigene 35 Probe Set = Contig16634_at; Contig5213_at Unigene 35 Rice Locus = LOC_Os03g53670 Description for best rice BLAST hit to Unigene 35 member = YT521-B-like family protein, expressed; E value = 0 BLAST hit in the rice genome = YT521-B-like family protein, expressed
Probe for Locus	HAR35_2111
Locus	POPA1_0521