Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA1_0524

Locus	POPA1_0524
Type	SNP
Synonym	Other name 11_10524 BOPA1_11_10524 BOPA1_370-443 Synonym 11_10524
Chromosome	5H
Chromosome Arm	5HL
Map	Hordeum-OPA-2009-5H 93.71 Hordeum-OPA123-2008-5H 93.71 Hordeum-OPAConsensus-2011-5H 82.42 Hordeum-OWB-OPA2008-5H 110.512
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_434 i_11_10524
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0524 Marker name in barley OPA1 = 11_10524 Original SNP name = 370-443 Most representative HarvEST:Barley Assembly #32 Unigene = 370 Most representative HarvEST:Barley Assembly #35 Unigene = 434 HarvEST Unigene 35 Probe Set = Contig169_at; Contig620_at Unigene 35 Rice Locus = LOC_Os09g30340 Description for best rice BLAST hit to Unigene 35 member = photosystem I reaction center subunit V, chloroplast precursor, putative, expressed; E value = 2E-57 HarvEST Unigene 35 Probe Set = Contig169_at, Contig620_at Description for best rice BLAST hit to Unigene 35 member = protein photosystem I reaction center subunit V, chloroplast precursor, putative, expressed; E value = 2E-57 BLAST hit in the rice genome = photosystem I reaction center subunit V, chloroplast precursor, putative, expressed
Probe for Locus	HAR35_434
Locus	POPA1_0524
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare