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GrainGenes Marker Report: POPA1_0525

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Locus
POPA1_0525
Type
SNP
Synonym
Other name11_10525
BOPA1_11_10525
BOPA1_3709-716
Synonym11_10525
Chromosome
2H
Chromosome Arm
2HS
Map
Barley, 2012 9KSNP 2H38.8
[ Show all 6 ]
[ Show Nearby Loci ]
QTL with Locus Marker
QSfnb-2H-38.03
Map Data
Barley, 2012 9KSNP
[ Show all 6 ]
Species
Hordeum vulgare
Probe
HAR35_16422
i_11_10525
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
ReferenceSzucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 10 ]
Marker name in barley Pilot OPA1 = 1_0525
Marker name in barley OPA1 = 11_10525
Original SNP name = 3709-716
Most representative HarvEST:Barley Assembly #32 Unigene = 3709
Most representative HarvEST:Barley Assembly #35 Unigene = 16422
HarvEST Unigene 35 Probe Set = Contig5165_at; HA12N13u_s_at
Unigene 35 Rice Locus = LOC_Os06g48230
HarvEST Unigene 35 Probe Set = Contig5165_at, HA12N13u_s_at
Description for best rice BLAST hit to Unigene 35 member = protein DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide, putative, expressed; E value = 5E-68
BLAST hit in the rice genome = DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide, putative, expressed


Probe for Locus
HAR35_16422
Locus
POPA1_0525
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare