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GrainGenes Marker Report: POPA1_0528

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Locus	POPA1_0528
Type	SNP
Synonym	Synonym 11_10528
Chromosome	5H
Chromosome Arm	5HL
Map	Hordeum-OPA-2009-5H 159.79 Hordeum-OPA123-2008-5H 159.79 Hordeum-OPAConsensus-2011-5H 155.45
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe	HAR35_16387
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_0528 Marker name in barley OPA1 = 11_10528 Original SNP name = 3720-52 Most representative HarvEST:Barley Assembly #32 Unigene = 3720 Most representative HarvEST:Barley Assembly #35 Unigene = 16387 HarvEST Unigene 35 Probe Set = Contig5175_at Unigene 35 Rice Locus = LOC_Os03g59320 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 5E-78 Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 5E-78 BLAST hit in the rice genome = expressed protein
Probe for Locus	HAR35_16387
Locus	POPA1_0528
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare