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GrainGenes Marker Report: POPA1_0531

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Locus	POPA1_0531
Type	SNP
Synonym	Synonym 11_10531
Chromosome	7H
Chromosome Arm	7HL
Map	Hordeum-OPA-2009-7H 84.92 Hordeum-OPA123-2008-7H 84.92 Hordeum-OPAConsensus-2011-7H 85.28 Hordeum-OWB-OPA2008-7H 89.558
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Probe	HAR35_16366
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_0531 Marker name in barley OPA1 = 11_10531 Original SNP name = 3731-103 Most representative HarvEST:Barley Assembly #32 Unigene = 3731 Most representative HarvEST:Barley Assembly #35 Unigene = 16366 HarvEST Unigene 35 Probe Set = Contig5484_at Unigene 35 Rice Locus = LOC_Os06g24730 Description for best rice BLAST hit to Unigene 35 member = hydrolase, alpha/beta fold family protein, expressed; E value = 0 Description for best rice BLAST hit to Unigene 35 member = protein hydrolase, alpha/beta fold family protein, expressed; E value = 0 BLAST hit in the rice genome = hydrolase, alpha/beta fold family protein, expressed
Probe for Locus	HAR35_16366
Locus	POPA1_0531 POPA2_0615
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare