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GrainGenes Marker Report: POPA1_0542

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Locus	POPA1_0542
Type	SNP
Synonym	Other name 12_10542 BOPA2_12_10542 Synonym 12_10542
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_16449 i_12_10542
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_0542 Marker name in barley OPA1 = 12_10542 Original SNP name = 3795-866 Most representative HarvEST:Barley Assembly #32 Unigene = 3795 Most representative HarvEST:Barley Assembly #35 Unigene = 16449 HarvEST Unigene 35 Probe Set = Contig5361_at Unigene 35 Rice Locus = LOC_Os01g71050 Description for best rice BLAST hit to Unigene 35 member = VAP27-2, putative, expressed; E value = 9E-99 BLAST hit in the rice genome = VAP27-2, putative, expressed
Probe for Locus	HAR35_16449
Locus	POPA1_0542