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GrainGenes Marker Report: POPA1_0543

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Locus
POPA1_0543
Type
SNP
Synonym
Other name12_10543
BOPA2_12_10543
Synonym12_10543
Chromosome
7H
Chromosome Arm
7HL
Map
Hordeum-OPA-2009-7H122.07
Hordeum-OPA123-2008-7H122.07
Hordeum-OPAConsensus-2011-7H121.36
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_1697
i_12_10543
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 12 ]
Marker name in barley Pilot OPA1 = 1_0543
Marker name in barley OPA1 = 12_10543
Original SNP name = 3799-1335
Most representative HarvEST:Barley Assembly #32 Unigene = 3799
Most representative HarvEST:Barley Assembly #35 Unigene = 1697
HarvEST Unigene 35 Probe Set = Contig5341_at
Unigene 35 Rice Locus = LOC_Os03g36540
Description for best rice BLAST hit to Unigene 35 member = magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed; E value = 0
Marker name in barley OPA2 = 12_10543
Original SNP name = U35_18491_1513
Description for best rice BLAST hit to Unigene 35 member = protein magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed; E value = 0
BLAST hit in the rice genome = magnesium-chelatase subunit chlI, chloroplast precursor, putative, expressed


Probe for Locus
HAR35_1697
Locus
POPA1_0543
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare