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GrainGenes Marker Report: POPA1_0554

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Locus	POPA1_0554
Type	SNP
Synonym	Other name 12_10554 BOPA2_12_10554 Synonym 12_10554
Chromosome	6H
Chromosome Arm	6HS
Map	Barley, 2012 9KSNP 6H 17.7 Hordeum-OPA-2009-6H 16.97 Hordeum-OPA123-2008-6H 16.97 Hordeum-OPAConsensus-2011-6H 23.62
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_15930 i_12_10554
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 13 ] Marker name in barley Pilot OPA1 = 1_0554 Marker name in barley OPA1 = 12_10554 Original SNP name = 384-815 Most representative HarvEST:Barley Assembly #32 Unigene = 384 Most representative HarvEST:Barley Assembly #35 Unigene = 15930 HarvEST Unigene 35 Probe Set = Contig600_at; Contig682_s_at; HA16L09r_s_at Unigene 35 Rice Locus = LOC_Os02g02320 Description for best rice BLAST hit to Unigene 35 member = serine carboxypeptidase 3 precursor, putative, expressed; E value = 0 Marker name in barley OPA2 = 12_10554 Original SNP name = OSU_HA16L09r_s_at_77 HarvEST Unigene 35 Probe Set = Contig600_at, Contig682_s_at, HA16L09r_s_at Description for best rice BLAST hit to Unigene 35 member = protein serine carboxypeptidase 3 precursor, putative, expressed; E value = 0 BLAST hit in the rice genome = serine carboxypeptidase 3 precursor, putative, expressed
Probe for Locus	HAR35_15930
Locus	POPA1_0554 POPA3_0842
Synonym	Synonym ABG654
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare