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GrainGenes Marker Report: POPA1_0557

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Locus
POPA1_0557
Type
SNP
Synonym
Other name11_10557
BOPA1_11_10557
BOPA1_3883-616
Synonym11_10557
Chromosome
5H
Chromosome Arm
5HL
Map
Hordeum-OPA-2009-5H147.4
Hordeum-OPA123-2008-5H147.4
Hordeum-OPAConsensus-2011-5H144.6
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_2075
i_11_10557
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
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Marker name in barley Pilot OPA1 = 1_0557
Marker name in barley OPA1 = 11_10557
Original SNP name = 3883-616
Most representative HarvEST:Barley Assembly #32 Unigene = 3883
Most representative HarvEST:Barley Assembly #35 Unigene = 2075
HarvEST Unigene 35 Probe Set = Contig5473_at; Contig5473_s_at
Unigene 35 Rice Locus = LOC_Os03g57290
Description for best rice BLAST hit to Unigene 35 member = cullin-4B, putative, expressed; E value = 1E-161
HarvEST Unigene 35 Probe Set = Contig5473_at, Contig5473_s_at
Description for best rice BLAST hit to Unigene 35 member = protein cullin-4B, putative, expressed; E value = 1E-161
BLAST hit in the rice genome = cullin-4B, putative, expressed


Probe for Locus
HAR35_2075
Locus
POPA1_0557
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare