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GrainGenes Marker Report: POPA1_0564

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Locus	POPA1_0564
Type	SNP
Synonym	Other name 12_10564 BOPA2_12_10564 Synonym 12_10564
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_16323 i_12_10564
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_0564 Marker name in barley OPA1 = 12_10564 Original SNP name = 3902-361 Most representative HarvEST:Barley Assembly #32 Unigene = 3902 Most representative HarvEST:Barley Assembly #35 Unigene = 16323 HarvEST Unigene 35 Probe Set = Contig5478_at; Contig5479_s_at Unigene 35 Rice Locus = LOC_Os05g05740 Description for best rice BLAST hit to Unigene 35 member = proline synthetase co-transcribed bacterial homolog protein, putative, expressed; E value = 4E-87 BLAST hit in the rice genome = proline synthetase co-transcribed bacterial homolog protein, putative, expressed
Probe for Locus	HAR35_16323
Locus	POPA1_0564