GrainGenes Marker Report: POPA1_0571
Locus
POPA1_0571
Type
SNP
Synonym
Synonym 12_10571
Chromosome
3H
Chromosome Arm
3HS
Map
Hordeum-OPA-2009-3H 15.55 Hordeum-OPA123-2008-3H 15.55 Hordeum-OPAConsensus-2011-3H 18.21
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Probe
HAR35_16410
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0571 Marker name in barley OPA1 = 12_10571 Original SNP name = 3950-1500 Most representative HarvEST:Barley Assembly #32 Unigene = 3950 Most representative HarvEST:Barley Assembly #35 Unigene = 16410 HarvEST Unigene 35 Probe Set = Contig5521_s_at Unigene 35 Rice Locus = LOC_Os01g01720 Description for best rice BLAST hit to Unigene 35 member = peroxin Pex14, putative, expressed; E value = 1E-151 Marker name in barley OPA2 = 12_10571 Description for best rice BLAST hit to Unigene 35 member = protein peroxin Pex14, putative, expressed; E value = 1E-151 BLAST hit in the rice genome = peroxin Pex14, putative, expressed
Probe for Locus
HAR35_16410
Locus
POPA1_0571
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA1_0571
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