Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: POPA1_0574

[Submit comment/correction]

Locus	POPA1_0574
Type	SNP
Synonym	Synonym 11_10574
Chromosome	4H
Chromosome Arm	4HS
Map	Hordeum-OPA-2009-4H 20.12 Hordeum-OPA123-2008-4H 20.12 Hordeum-OPAConsensus-2011-4H 21.53 Hordeum-OWB-OPA2008-4H 25.941
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Probe	HAR35_16008
Reference	Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_0574 Marker name in barley OPA1 = 11_10574 Original SNP name = 3968-342 Most representative HarvEST:Barley Assembly #32 Unigene = 3968 Most representative HarvEST:Barley Assembly #35 Unigene = 16008 HarvEST Unigene 35 Probe Set = Contig5487_s_at Unigene 35 Rice Locus = LOC_Os03g48626 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 5E-49 Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 5E-49 BLAST hit in the rice genome = expressed protein
Probe for Locus	HAR35_16008
Locus	POPA1_0574
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare