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GrainGenes Marker Report: POPA1_0584

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Locus	POPA1_0584
Type	SNP
Synonym	Other name 11_10584 BOPA1_11_10584 BOPA1_4025-300 Synonym 11_10584
Chromosome	3H
Chromosome Arm	3HL
Map	Hordeum-OPA-2009-3H 117.1 Hordeum-OPA123-2008-3H 117.1 Hordeum-OPAConsensus-2011-3H 127.26 Hordeum-OWB-OPA2008-3H 133.837
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_16147 i_11_10584
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 1_0584 Marker name in barley OPA1 = 11_10584 Original SNP name = 4025-300 Most representative HarvEST:Barley Assembly #32 Unigene = 4025 Most representative HarvEST:Barley Assembly #35 Unigene = 16147 HarvEST Unigene 35 Probe Set = Contig5626_s_at; EBma01_SQ002_F07_s_at Unigene 35 Rice Locus = LOC_Os08g44270 Description for best rice BLAST hit to Unigene 35 member = vignain precursor, putative, expressed; E value = 1E-161 Original SNP name = SCRI_aj420778_01_1 HarvEST Unigene 35 Probe Set = Contig5626_s_at, EBma01_SQ002_F07_s_at Description for best rice BLAST hit to Unigene 35 member = protein vignain precursor, putative, expressed; E value = 1E-161 BLAST hit in the rice genome = vignain precursor, putative, expressed
Probe for Locus	HAR35_16147
Locus	POPA1_0584 POPA2_0661
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare