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GrainGenes Marker Report: POPA1_0593

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Locus	POPA1_0593
Type	SNP
Synonym	Other name 11_10593 BOPA1_11_10593 BOPA1_4066-328 Synonym 11_10593
Chromosome	5H
Chromosome Arm	5HL
Map	Hordeum-OPAConsensus-2011-5H 164.36
	[ Show Nearby Loci ]
Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus
Species	Hordeum vulgare
Probe	HAR35_16529 i_11_10593
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_0593 Marker name in barley OPA1 = 11_10593 Original SNP name = 4066-328 Most representative HarvEST:Barley Assembly #32 Unigene = 4066 Most representative HarvEST:Barley Assembly #35 Unigene = 16529 HarvEST Unigene 35 Probe Set = Contig5585_s_at; Contig5586_at Unigene 35 Rice Locus = LOC_Os03g61260 Description for best rice BLAST hit to Unigene 35 member = 50S ribosomal protein L18, chloroplast precursor, putative, expressed; E value = 8E-74 BLAST hit in the rice genome = 50S ribosomal protein L18, chloroplast precursor, putative, expressed
Probe for Locus	HAR35_16529
Locus	POPA1_0593