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GrainGenes Marker Report: POPA1_0601

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Locus	POPA1_0601
Type	SNP
Synonym	Other name 11_10601 BOPA1_11_10601 BOPA1_4105-1417 Synonym 11_10601
Chromosome	3H
Chromosome Arm	3HS
Map	Barley, 2012 9KSNP 3H 45.8 Hordeum-OPA-2009-3H 46.31 Hordeum-OPA123-2008-3H 46.31 Hordeum-OPAConsensus-2011-3H 50.19
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_16482 i_11_10601
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0601 Marker name in barley OPA1 = 11_10601 Original SNP name = 4105-1417 Most representative HarvEST:Barley Assembly #32 Unigene = 4105 Most representative HarvEST:Barley Assembly #35 Unigene = 16482 HarvEST Unigene 35 Probe Set = Contig5687_s_at; Contig5688_at; EBem09_SQ004_B23_s_at Unigene 35 Rice Locus = LOC_Os01g09620 Description for best rice BLAST hit to Unigene 35 member = nucleic acid binding protein, putative, expressed; E value = 1E-157 HarvEST Unigene 35 Probe Set = Contig5687_s_at, Contig5688_at, EBem09_SQ004_B23_s_at Description for best rice BLAST hit to Unigene 35 member = protein nucleic acid binding protein, putative, expressed; E value = 1E-157 BLAST hit in the rice genome = nucleic acid binding protein, putative, expressed
Probe for Locus	HAR35_16482
Locus	POPA1_0601
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare