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GrainGenes Marker Report: POPA1_0602

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Locus	POPA1_0602
Type	SNP
Synonym	Other name 11_10602 BOPA1_11_10602 BOPA1_411-495 Synonym 11_10602
Chromosome	2H
Chromosome Arm	2HS
Map	Barley, 2012 9KSNP 2H 55.5 Hordeum-OPA-2009-2H 58.24 Hordeum-OPA123-2008-2H 58.24 Hordeum-OPAConsensus-2011-2H 63.55
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_396 i_11_10602
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 1_0602 Marker name in barley OPA1 = 11_10602 Original SNP name = 411-495 Most representative HarvEST:Barley Assembly #32 Unigene = 411 Most representative HarvEST:Barley Assembly #35 Unigene = 396 HarvEST Unigene 35 Probe Set = Contig636_at; HVSMEl0025G13f_s_at Unigene 35 Rice Locus = LOC_Os07g37550 Description for best rice BLAST hit to Unigene 35 member = chlorophyll a-b binding protein of LHCII type III, chloroplast precursor, putative, expressed; E value = 1E-135 Original SNP name = U35_20266_369 HarvEST Unigene 35 Probe Set = Contig636_at, HVSMEl0025G13f_s_at Description for best rice BLAST hit to Unigene 35 member = protein chlorophyll a-b binding protein of LHCII type III, chloroplast precursor, putative, expressed; E value = 1E-135 BLAST hit in the rice genome = chlorophyll a-b binding protein of LHCII type III, chloroplast precursor, putative, expressed
Probe for Locus	HAR35_396
Locus	POPA1_0602
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare