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GrainGenes Marker Report: POPA1_0605

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Locus
POPA1_0605
Type
SNP
Synonym
Other name12_10605
BOPA2_12_10605
Synonym12_10605
Chromosome
7H
Chromosome Arm
7HS
Map
Barley, 2012 9KSNP 7H61.2
Hordeum-OPA-2009-7H64.8
Hordeum-OPA123-2008-7H64.8
Hordeum-OPAConsensus-2011-7H58.53
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_16547
i_12_10605
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 1_0605
Marker name in barley OPA1 = 12_10605
Original SNP name = 4129-1119
Most representative HarvEST:Barley Assembly #32 Unigene = 4129
Most representative HarvEST:Barley Assembly #35 Unigene = 16547
HarvEST Unigene 35 Probe Set = Contig5705_at
Unigene 35 Rice Locus = LOC_Os06g11130
Description for best rice BLAST hit to Unigene 35 member = gibberellin receptor GID1L2, putative, expressed; E value = 1E-88
Marker name in barley OPA2 = 12_10605
Description for best rice BLAST hit to Unigene 35 member = protein gibberellin receptor GID1L2, putative, expressed; E value = 1E-88
BLAST hit in the rice genome = gibberellin receptor GID1L2, putative, expressed


Probe for Locus
HAR35_16547
Locus
POPA1_0605
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare