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GrainGenes Marker Report: POPA1_0610

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Locus	POPA1_0610
Type	SNP
Synonym	Other name 11_10610 BOPA1_11_10610 BOPA1_4152-573 Synonym 11_10610
Chromosome	4H
Chromosome Arm	4HL
Map	Hordeum-OPA-2009-4H 119.09 Hordeum-OPA123-2008-4H 119.09 Hordeum-OPAConsensus-2011-4H 139.97 Hordeum-OWB-OPA2008-4H 115.037
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_14974 i_11_10610
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 1_0610 Marker name in barley OPA1 = 11_10610 Original SNP name = 4152-573 Most representative HarvEST:Barley Assembly #32 Unigene = 4152 Most representative HarvEST:Barley Assembly #35 Unigene = 14974 HarvEST Unigene 35 Probe Set = Contig5807_s_at; Contig5808_at; HVSMEn0020G09f_s_at Unigene 35 Rice Locus = LOC_Os04g46830 Description for best rice BLAST hit to Unigene 35 member = cortical cell-delineating protein precursor, putative, expressed; E value = 3E-36 Original SNP name = OSU_HvSNF2_212 HarvEST Unigene 35 Probe Set = Contig5807_s_at, Contig5808_at, HVSMEn0020G09f_s_at Description for best rice BLAST hit to Unigene 35 member = protein cortical cell-delineating protein precursor, putative, expressed; E value = 3E-36 BLAST hit in the rice genome = cortical cell-delineating protein precursor, putative, expressed
Probe for Locus	HAR35_14974
Locus	POPA1_0610
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare