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GrainGenes Marker Report: POPA1_0613

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Locus	POPA1_0613
Type	SNP
Synonym	Other name 12_10613 BOPA2_12_10613 Synonym 12_10613
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_2228 i_12_10613
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_0613 Marker name in barley OPA1 = 12_10613 Original SNP name = 4169-1013 Most representative HarvEST:Barley Assembly #32 Unigene = 4169 Most representative HarvEST:Barley Assembly #35 Unigene = 2228 HarvEST Unigene 35 Probe Set = Contig5966_at; S0001100160A01F1_at Unigene 35 Rice Locus = LOC_Os05g01450 Description for best rice BLAST hit to Unigene 35 member = eukaryotic translation initiation factor 3 subunit 5, putative, expressed; E value = 1E-141 BLAST hit in the rice genome = eukaryotic translation initiation factor 3 subunit 5, putative, expressed
Probe for Locus	HAR35_2228
Locus	POPA1_0613 POPA3_0946