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GrainGenes Marker Report: POPA1_0620

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Locus	POPA1_0620
Type	SNP
Synonym	Other name 11_10620 BOPA1_11_10620 BOPA1_4213-2378 Synonym 11_10620
Chromosome	3H
Chromosome Arm	3HL
Map	Barley, 2012 9KSNP 3H 51.6 Hordeum-OPA-2009-3H 56.4 Hordeum-OPA123-2008-3H 56.4 Hordeum-OPAConsensus-2011-3H 65.25
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_2384 i_11_10620
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_0620 Marker name in barley OPA1 = 11_10620 Original SNP name = 4213-2378 Most representative HarvEST:Barley Assembly #32 Unigene = 4213 Most representative HarvEST:Barley Assembly #35 Unigene = 2384 HarvEST Unigene 35 Probe Set = Contig5853_at Unigene 35 Rice Locus = LOC_Os01g43370 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 0 Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 0 BLAST hit in the rice genome = expressed protein
Probe for Locus	HAR35_2384
Locus	POPA1_0620
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare