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GrainGenes Marker Report: POPA1_0625

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Locus	POPA1_0625
Type	SNP
Synonym	Other name 11_10625 BOPA1_11_10625 BOPA1_4240-749 Synonym 11_10625
Chromosome	2H
Chromosome Arm	2HL
Map	Barley, 2012 9KSNP 2H 132.6 Hordeum-OPA-2009-2H 139.65 Hordeum-OPA123-2008-2H 139.65 Hordeum-OPAConsensus-2011-2H 156.77
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_16826 i_11_10625
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_0625 Marker name in barley OPA1 = 11_10625 Original SNP name = 4240-749 Most representative HarvEST:Barley Assembly #32 Unigene = 4240 Most representative HarvEST:Barley Assembly #35 Unigene = 16826 HarvEST Unigene 35 Probe Set = Contig5980_s_at Unigene 35 Rice Locus = LOC_Os04g54330 Description for best rice BLAST hit to Unigene 35 member = protein N-terminal acetyltransferase complex ARD1 subunit homolog A, putative, expressed; E value = 1E-102 BLAST hit in the rice genome = N-terminal acetyltransferase complex ARD1 subunit homolog A, putative, expressed
Probe for Locus	HAR35_16826
Locus	POPA1_0625
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare