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GrainGenes Marker Report: POPA1_0626

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Locus	POPA1_0626
Type	SNP
Synonym	Other name 12_10626 BOPA2_12_10626 Synonym 12_10626
Chromosome	4H
Chromosome Arm	4HS
Map	Hordeum-OPA-2009-4H 24.59 Hordeum-OPA123-2008-4H 24.59 Hordeum-OPAConsensus-2011-4H 26.2 Hordeum-OWB-OPA2008-4H 31.376
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Map Data	Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_2006 i_12_10626
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 1_0626 Marker name in barley OPA1 = 12_10626 Original SNP name = 4243-2278 Most representative HarvEST:Barley Assembly #32 Unigene = 4243 Most representative HarvEST:Barley Assembly #35 Unigene = 2006 HarvEST Unigene 35 Probe Set = Contig5912_at; Contig5913_s_at Unigene 35 Rice Locus = LOC_Os03g49510 Description for best rice BLAST hit to Unigene 35 member = phosphatidylinositol-4-phosphate 5-kinase 1 precursor, putative, expressed; E value = 0 Marker name in barley OPA2 = 12_10626 HarvEST Unigene 35 Probe Set = Contig5912_at, Contig5913_s_at Description for best rice BLAST hit to Unigene 35 member = protein phosphatidylinositol-4-phosphate 5-kinase 1 precursor, putative, expressed; E value = 0 BLAST hit in the rice genome = phosphatidylinositol-4-phosphate 5-kinase 1 precursor, putative, expressed
Probe for Locus	HAR35_2006
Locus	POPA1_0626
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare