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GrainGenes Marker Report: POPA1_0649

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Locus	POPA1_0649
Type	SNP
Synonym	Other name 12_10649 BOPA2_12_10649 Synonym 12_10649
Chromosome	2H
Chromosome Arm	2HL
Map	Barley, 2012 9KSNP 2H 89.5 Hordeum-OPA-2009-2H 96.82 Hordeum-OPA123-2008-2H 96.82 Hordeum-OPAConsensus-2011-2H 108.58
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_16905 i_12_10649
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 10 ] Marker name in barley Pilot OPA1 = 1_0649 Marker name in barley OPA1 = 12_10649 Original SNP name = 4419-1392 Most representative HarvEST:Barley Assembly #32 Unigene = 4419 Most representative HarvEST:Barley Assembly #35 Unigene = 16905 HarvEST Unigene 35 Probe Set = Contig6071_s_at Unigene 35 Rice Locus = LOC_Os04g47120 Marker name in barley OPA2 = 12_10649 Description for best rice BLAST hit to Unigene 35 member = protein acyl-CoA thioesterase/ cyclic nucleotide binding protein, putative, expressed; E value = 0 BLAST hit in the rice genome = acyl-CoA thioesterase/ cyclic nucleotide binding protein, putative, expressed
Probe for Locus	HAR35_16905
Locus	POPA1_0649
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare