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GrainGenes Marker Report: POPA1_0654

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Locus	POPA1_0654
Type	SNP
Synonym	Other name 11_10654 BOPA1_11_10654 BOPA1_4456-443 Synonym 11_10654
Chromosome	1H
Map Data	Barley, OPA 2009, Consensus
Species	Hordeum vulgare
Probe	HAR35_16499 i_11_10654
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark	[ Hide all but 1 of 9 ] Marker name in barley Pilot OPA1 = 1_0654 Marker name in barley OPA1 = 11_10654 Original SNP name = 4456-443 Most representative HarvEST:Barley Assembly #32 Unigene = 4456 Most representative HarvEST:Barley Assembly #35 Unigene = 16499 HarvEST Unigene 35 Probe Set = Contig6285_at; Contig6285_s_at Unigene 35 Rice Locus = LOC_Os12g41760 Description for best rice BLAST hit to Unigene 35 member = conserved hypothetical protein; E value = 5E-21 BLAST hit in the rice genome = conserved hypothetical protein
Probe for Locus	HAR35_16499
Locus	POPA1_0654