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GrainGenes Marker Report: POPA1_0655

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Locus
POPA1_0655
Type
SNP
Synonym
Other name12_10655
BOPA2_12_10655
Synonym12_10655
Chromosome
7H
Chromosome Arm
7HS
Map
Barley, 2012 9KSNP 7H70.1
Hordeum-OPA-2009-7H76.17
Hordeum-OPA123-2008-7H76.17
Hordeum-OPAConsensus-2011-7H80.3
[ Show Nearby Loci ]
Map Data
Barley, 2012 9KSNP
Barley, OPA 2009, Consensus
Barley, OPA 2011, Consensus
Barley, OPA123-2008, Consensus
Species
Hordeum vulgare
Probe
HAR35_16689
i_12_10655
Reference
ReferenceComadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392.
ReferenceClose TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 11 ]
Marker name in barley Pilot OPA1 = 1_0655
Marker name in barley OPA1 = 12_10655
Original SNP name = 4460-739
Most representative HarvEST:Barley Assembly #32 Unigene = 4460
Most representative HarvEST:Barley Assembly #35 Unigene = 16689
HarvEST Unigene 35 Probe Set = Contig6218_at
Unigene 35 Rice Locus = LOC_Os08g42040
Description for best rice BLAST hit to Unigene 35 member = lipid transfer protein, putative, expressed; E value = 1E-60
Marker name in barley OPA2 = 12_10655
Description for best rice BLAST hit to Unigene 35 member = protein lipid transfer protein, putative, expressed; E value = 1E-60
BLAST hit in the rice genome = lipid transfer protein, putative, expressed


Probe for Locus
HAR35_16689
Locus
POPA1_0655
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare