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GrainGenes Marker Report: POPA1_0657

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Locus	POPA1_0657
Type	SNP
Synonym	Other name 12_10657 BOPA2_12_10657 Synonym 12_10657
Chromosome	7H
Chromosome Arm	7HS
Map	Barley, 2012 9KSNP 7H 61.5 Hordeum-OPA-2009-7H 68.46 Hordeum-OPA123-2008-7H 68.46 Hordeum-OPAConsensus-2011-7H 61.67 Hordeum-OWB-OPA2008-7H 64.14
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus Barley, OWB, OPA2008
Species	Hordeum vulgare
Probe	HAR35_1619 i_12_10657
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582. Szucs P et al. (2009) An Integrated Resource for Barley Linkage Map and Malting Quality QTL Alignment The Plant Genome 2:134-140.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 12 ] Marker name in barley Pilot OPA1 = 1_0657 Marker name in barley OPA1 = 12_10657 Original SNP name = 4475-340 Most representative HarvEST:Barley Assembly #32 Unigene = 4475 Most representative HarvEST:Barley Assembly #35 Unigene = 1619 HarvEST Unigene 35 Probe Set = Contig6194_s_at Unigene 35 Rice Locus = LOC_Os06g11290 Description for best rice BLAST hit to Unigene 35 member = 12-oxophytodienoate reductase 2, putative, expressed; E value = 0 Marker name in barley OPA2 = 12_10657 Original SNP name = U35_5336_348 Description for best rice BLAST hit to Unigene 35 member = protein 12-oxophytodienoate reductase 2, putative, expressed; E value = 0 BLAST hit in the rice genome = 12-oxophytodienoate reductase 2, putative, expressed
Probe for Locus	HAR35_1619
Locus	POPA2_0750 POPA1_0657
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare