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GrainGenes Marker Report: POPA1_0661

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Locus	POPA1_0661
Type	SNP
Synonym	Other name 11_10661 BOPA1_11_10661 BOPA1_4517-217 Synonym 11_10661
Chromosome	5H
Chromosome Arm	5HL
Map	Barley, 2012 9KSNP 5H 44.2 Hordeum-OPA-2009-5H 51.6 Hordeum-OPA123-2008-5H 51.6 Hordeum-OPAConsensus-2011-5H 42.41
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Map Data	Barley, 2012 9KSNP Barley, OPA 2009, Consensus Barley, OPA 2011, Consensus Barley, OPA123-2008, Consensus
Species	Hordeum vulgare
Probe	HAR35_2632 i_11_10661
Reference	Comadran J et al. (2012) Natural variation in a homolog of Antirrhinum CENTRORADIALIS contributed to spring growth habit and environmental adaptation in cultivated barley Nature Genetics 44:1388-1392. Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source	Close, Timothy J.
Remark	[ Hide all but 1 of 11 ] Marker name in barley Pilot OPA1 = 1_0661 Marker name in barley OPA1 = 11_10661 Original SNP name = 4517-217 Most representative HarvEST:Barley Assembly #32 Unigene = 4517 Most representative HarvEST:Barley Assembly #35 Unigene = 2632 HarvEST Unigene 35 Probe Set = Contig6209_at Unigene 35 Rice Locus = LOC_Os12g05000 Description for best rice BLAST hit to Unigene 35 member = expressed protein; E value = 1E-111 Original SNP name = U35_19318_363 Description for best rice BLAST hit to Unigene 35 member = protein expressed protein; E value = 1E-111 BLAST hit in the rice genome = expressed protein
Probe for Locus	HAR35_2632
Locus	POPA1_0661
General Remarks	Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type	cDNA
Source Species	Hordeum vulgare