GrainGenes Marker Report: POPA1_0664
Locus
POPA1_0664
Type
SNP
Map Data
Barley, OPA 2009, Consensus
Probe
HAR35_17106
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Remark
[ Hide all but 1 of 7 ] Marker name in barley Pilot OPA1 = 1_0664 Most representative HarvEST:Barley Assembly #32 Unigene = 4531 Most representative HarvEST:Barley Assembly #35 Unigene = 17106 HarvEST Unigene 35 Probe Set = Contig6169_at; Contig6170_s_at; HVSMEb0002K02r2_s_at Unigene 35 Rice Locus = LOC_Os01g01840 Description for best rice BLAST hit to Unigene 35 member = helix-loop-helix DNA-binding domain containing protein, expressed; E value = 4E-42 BLAST hit in the rice genome = helix-loop-helix DNA-binding domain containing protein, expressed
Probe for Locus
HAR35_17106
Locus
POPA2_0760 POPA1_0664
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA1_0664
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