GrainGenes Marker Report: POPA1_0665
Locus
POPA1_0665
Type
SNP
Chromosome
5H
Chromosome Arm
5HS
Map
Hordeum-OPA-2009-5H 27.72 Hordeum-OPA123-2008-5H 27.72
[ Show Nearby Loci ]
Map Data
Barley, OPA 2009, Consensus Barley, OPA123-2008, Consensus
Probe
HAR35_2224
Reference
Close TJ et al. (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics 10:582.
Data Source
Close, Timothy J.
Remark
[ Hide all but 1 of 8 ] Marker name in barley Pilot OPA1 = 1_0665 Most representative HarvEST:Barley Assembly #32 Unigene = 4532 Most representative HarvEST:Barley Assembly #35 Unigene = 2224 HarvEST Unigene 35 Probe Set = Contig6238_s_at Unigene 35 Rice Locus = LOC_Os01g27210 Original SNP name = 4532-720 Description for best rice BLAST hit to Unigene 35 member = protein glutathione S-transferase IV, putative, expressed; E value = 1E-103 BLAST hit in the rice genome = glutathione S-transferase IV, putative, expressed
Probe for Locus
HAR35_2224
Locus
POPA2_0761 POPA1_0665
General Remarks
Probe name is structured 'HAR35_xxxxx' where HAR35 denotes the 35th assembly in the HarvEST project and xxxx is the Unigene number
Type
cDNA
Source Species
Hordeum vulgare
GrainGenes Marker Report: POPA1_0665
|
| ||||||||||
|
| ||||||||||
|
| ||||||||||
|
| ||||||||||
|
| ||||||||||
| |||||||||||
|
| ||||||||||
|
| ||||||||||
|
| ||||||||||
|
| ||||||||||
|
| ||||||||||
|
| ||||||||||
|
| ||||||||||
|
| ||||||||||
|
| ||||||||||
|
|